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Data Engineer - Oncology
Posted on 5/6/2022
INACTIVE
Locations
San Francisco, CA, USA
Experience Level
Entry
Junior
Mid
Senior
Expert
Desired Skills
Data Analysis
Data Structures & Algorithms
Python
Requirements
  • Bachelors degree in bioinformatics, computer science or a related discipline and 2-5 years of related work experience or an advanced degree in bioinformatics or computer science
  • 2+ years of hands-on experience managing and using clinical and/or molecular data (experience with oncology data a plus)
  • Strong track record in extracting, transforming, and loading data from diverse sources
  • Excellent coding skills in Python, database experience required
  • Experience designing and working with software and data quality tests
  • Ability to devise and refine data visualizations
  • Enthusiasm for quality / reproducible data analysis within a strong team
  • MS in bioinformatics, computer science, or other related field
Responsibilities
  • Ingest oncology clinical and molecular data into our database from source systems by engineering reproducible pipelines
  • Build tests to assure pipeline and data quality
  • Identify, analyze and prioritize sources of data (on patients, molecular assays, treatments etc.)
  • Collaborate with engineers and other software professionals to craft and build robust data systems
  • Design data flows, algorithms and visualizations to enable effective use of data
  • Contribute your data skills to partnerships and collaborations
Desired Qualifications
  • Bioinformatics experience is a plus
Invitae
Invitae is a medical genetics company.
Company Overview
Invitae is a medical genetics company.