Full-Time

Machine Learning Research Engineer

Calico Labs

Calico Labs

201-500 employees

Biopharmaceutical research on aging therapies

Compensation Overview

$220k - $290k/yr

+ Two annual cash bonuses

South San Francisco, CA, USA

In Person

At least four days on-site per week required.

Bachelor's, Master's, PhD

Category
AI & Machine Learning (1)
Required Skills
Kubernetes
Python
Distributed Systems
Neural Networks
PyTorch
Machine Learning
Docker
Google Cloud Platform

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Requirements
  • A strong intellectual curiosity for life sciences.
  • A Bachelor’s or Master’s degree with 7 or more years of relevant experience, or a PhD with 4 or more years of relevant experience.
  • Expertise in Python and JAX or PyTorch.
  • A track record of building, training, or optimizing advanced machine learning architectures, such as transformers, diffusion networks, or graph neural networks, from concept to publication or production.
  • Willingness to work on-site at least four days per week.
Responsibilities
  • Translate new ideas and prototype models, including diffusion networks, vision transformers, and DNA sequence models, into highly optimized and scalable JAX or PyTorch code on accelerators.
  • Optimize model training and inference performance by implementing advanced strategies such as model parallelism.
  • Identify emerging engineering gaps required to expand research capabilities.
  • Architect solutions for complex systems challenges, including asynchronous execution, hardware orchestration, and high-throughput data pipelines.
  • Build foundational libraries that enforce software engineering rigor.
  • Design and implement evaluation frameworks, benchmarks, and scientific workflow tools that accelerate the research lifecycle and enable rapid testing of promising ideas.
  • Drive the engineering vision for machine learning models from identifying high-impact research opportunities through delivery of production-grade systems.
Desired Qualifications
  • Experience working with biological, medical, or chemistry datasets.
  • Contributions to open-source machine learning projects or first-author machine learning publications.
  • Experience training models across distributed systems and optimizing performance.
  • Experience with cloud infrastructure such as Google Cloud Platform, Kubernetes, and Docker.
  • An advanced degree in computer science.

Calico Labs conducts research to understand aging biology and develops treatments for age-related diseases in the biopharmaceutical space. It uses basic and translational science with advanced technologies and collaborations with universities and other pharma companies to study aging mechanisms and translate discoveries into therapies. Its main value comes from partnerships, shared intellectual property, and co-development of new therapies funded by grants and research contracts, rather than selling products directly from its own labs. The goal is to slow or prevent diseases linked to aging by turning biological insights into real-world therapies, leveraging a network of researchers and industry partners to accelerate progress.

Company Size

201-500

Company Stage

Seed

Total Funding

$2M

Headquarters

South San Francisco, California

Founded

2013

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Simplify Jobs

Simplify's Take

What believers are saying

  • FDA granted fosigotifator Breakthrough Therapy Designation on June 23, 2026.
  • Calico’s clinical-trials page lists Phase 2 ABBV-CLS-628 and Phase 1b/2 fosigotifator.
  • Philip Kym joined as Head of Drug Discovery, and Calico posted peptide openings.

What critics are saying

  • AbbVie ended its alliance in November 2025, cutting roughly 100 jobs.
  • AbbVie’s exit leaves Calico’s small-molecule engine exposed before Nexo delivers candidates.
  • If Nexo and fosigotifator fail, Calico stays a science project dependent on Alphabet.

What makes Calico Labs unique

  • Alphabet backs Calico, giving it patient capital for decade-long aging programs.
  • Calico’s May 21, 2026 Nexo deal targets hard-to-drug aging biology with small molecules.
  • Broad Institute collaboration runs through September 2029, sustaining neurodegeneration and discovery work.

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Benefits

Performance Bonus

Professional Development Budget

Growth & Insights and Company News

Headcount

6 month growth

14%

1 year growth

14%

2 year growth

13%
Calico
May 21st, 2026
Calico and Nexo enter into collaboration to discover and develop small molecule therapies for age-related diseases.

Calico and Nexo enter into collaboration to discover and develop small molecule therapies for age-related diseases. South San Francisco, Calif., and Watertown, Mass., May 21, 2026 - Calico Life Sciences LLC (Calico), a clinical-stage biotechnology organization focused on aging and age-related diseases and founded by Alphabet Inc. and Arthur D. Levinson, Ph.D., and Nexo Therapeutics Inc. (Nexo), today announced a multi-target collaboration to discover and develop small molecule therapeutics for challenging disease targets. Under the terms of the agreement, the companies will jointly pursue targets nominated by Calico, leveraging Nexo's expertise and proprietary platform to identify and optimize small molecule candidates. Calico will lead further development and commercialization of programs emerging from the collaboration. "We are pleased to partner with Nexo to explore new approaches to targeting challenging disease biology," said Jonathan W. Lewis, Ph.D., Chief Business Officer at Calico. "As Calico continues to advance its early pipeline and build new collaborations, we are focused on pairing our deep understanding of aging biology with partners who can help accelerate the translation of our insights into new therapeutics. Nexo's integrated platform offers a compelling approach to defining pharmacology and enabling the discovery of novel small molecule therapies for historically undruggable or hard-to-drug targets." Nexo's platform combines advanced chemistry and chemical biology to expand what can be targeted with small molecule therapies. Its CODON engine uses a proprietary covalent library and proteomics to identify and optimize compounds. These capabilities establish target profiles early in discovery, helping guide medicinal chemistry and accelerate development towards the clinic. "For too many people, there are still no therapies that address the fundamental drivers of their disease," said Rhamy Zeid, Chief Scientific Officer at Nexo. "To expand what is druggable, Nexo is working at the intersection of target biology and ligand discovery to pursue therapies against elusive targets. This collaboration allows us to pair those capabilities with Calico's deep expertise in disease biology and advance small molecule candidates not accessible through traditional approaches." About Calico Calico (Calico Life Sciences LLC) is an Alphabet-founded research and development company whose mission is to harness advanced technologies and model systems to increase its understanding of the biology that controls human aging. Calico will use that knowledge to devise interventions that enable people to lead longer and healthier lives. To learn more about Calico, visit www.calicolabs.com. Follow @calico on LinkedIn, X, and YouTube. About Nexo Nexo Therapeutics Inc. is a small-molecule company dedicated to the discovery and development of new drugs for patients who currently lack meaningful therapies. Nexo combines covalent ligand discovery and chemical biology with expertise in biology and medicinal chemistry to target fundamental drivers of disease by innovative approaches. For more information, please visit www.nexotx.com. Media Contact

pharmaphorum
Nov 13th, 2025
AbbVie exits alliance with Alphabet biotech Calico; report

AbbVie exits alliance with Alphabet biotech Calico; report. Reports are emerging that a multibillion-dollar partnership between AbbVie and Alphabet-backed biotech Calico has come to an end after more than a decade. The divorce - first report by Stat - comes just a few days after Calico issued a press release that celebrated the FDA award of orphan drug status to ABBV-CLS-628, an AbbVie-partnered programme in phase 2 testing for autosomal dominant polycystic kidney disease (ADPKD) that has also been fast-tracked by the US regulator. The alliance between AbbVie and Calico dates back to 2014, just a year after it was launched by Alphabet's Google unit, when the two companies pledged up to $1.5 billion to a joint effort to develop treatments for age-related diseases, including neurodegenerative disorders and cancer. It was expanded in 2018 and again in 2021 to a potential value of $3.5 billion, with Calico responsible for taking projects into early clinical development until 2025 and running phase 2a trials until 2030, with AbbVie having an option to take over projects once they reach later-stage development and to lead commercial activities. However, after more than 11 years and an investment of more than $1.75 billion, the partners have yet to score a regulatory approval for a new medicine. Just last month, Calico appointed AbbVie's former head of global medicinal chemistry, Philip Kym, for the newly created role of head of drug discovery, in a further sign of how closely the two companies have been working. According to Stat, AbbVie's change of heart - revealed in a series of internal emails - is a result of shift in strategy at the pharma group away from small-molecule drugs and towards more complex genetic medicines and will lead to around 100 employees losing their jobs. AbbVie has not commented on the status of its relationship with Calico. If confirmed, the separation also follows disappointing results with another AbbVie-partnered programme - fosigotifator (ABBV-CLS-7262) for amyotrophic lateral sclerosis (ALS) - earlier this year. Data from an arm of the HEALEY ALS Platform Trial found no evidence for any impact on ALS disease progression with fosigotifator, an eIF2B activator, as well as secondary measures like ALS symptoms, respiratory function, and quality-of-life scores. Other partnered projects include ABBV-CLS-484, a PTN1/2 inhibitor in early-stage clinical testing as a potential cancer immunotherapy. Meanwhile, a recent decision to in-license an antibody-based IL-11 inhibitor (9MW3811) for fibrotic diseases from China's Mabwell Bioscience, rather than continue to rely on its in-house discovery engine, has also been viewed in some quarters as a sign that Calico has not been firing on all cylinders.

BioSpace
Jun 27th, 2025
Alphabet Subsidiary Calico Colors In Up To $570M+ Aging Deal With China's Mabwell

Alphabet's aging-focused subsidiary Calico Life Sciences has entered into an exclusive licensing agreement with Mabwell Bioscience to advance the Shanghai biotech's anti-IL-11 monoclonal antibodies for age-related diseases.

Fierce Biotech
Jun 26th, 2025
Alphabet's Calico stitches $596M deal for Mabwell's anti-aging asset

According to the agreement, Calico will have exclusive rights to develop and commercialize 9MW3811 in all regions except greater China.

PR Newswire
Jun 7th, 2024
Calico Life Sciences Announces That Fosigotifator (Abbv-Cls-7262) For Vanishing White Matter Disease Has Been Selected For The Fda Start Pilot Program

SOUTH SAN FRANCISCO, Calif., June 7, 2024 /PRNewswire/ -- Calico Life Sciences LLC (Calico), a biotechnology organization focused on the biology of aging and age-related diseases, and founded by Alphabet and Arthur D. Levinson, Ph.D., today announced that its investigational eIF2B activator fosigotifator (ABBV-CLS-7262) has been accepted into the U.S. Food and Drug Administration (FDA) Support for clinical Trials Advancing Rare disease Therapeutics (START) Pilot Program. Fosigotifator is being developed by Calico and AbbVie pursuant to their 2014 collaboration as a potential treatment for Vanishing White Matter (VWM) disease.FDA's Center for Biologics Evaluation and Research (CBER) and Center for Drug Evaluation and Research (CDER) initiated the START Pilot Program to help further accelerate the development of novel drug and biological products for rare diseases. Selected participants will be able to obtain frequent advice and enhanced communication with FDA review staff to address program-specific development issues, including, but not limited, to clinical study design, choice of control group, and fine-tuning the choice of patient population."Calico is honored that fosigotifator has been selected by CDER as one of three candidates for the FDA's innovative START Pilot Program. The inclusion of fosigotifator underscores the potential of this investigational therapy in addressing the unmet needs of individuals and families affected by Vanishing White Matter Disease," said Arthur D