Full-Time

Computational Scientist for de novo Protein Design

Posted on 3/18/2025

Sanofi

Sanofi

10,001+ employees

Develops pharmaceuticals and vaccines globally

No salary listed

Mid, Senior

Cambridge, MA, USA + 2 more

More locations: Paris, France | Frankfurt, Germany

The job is hybrid, requiring some in-person presence.

Category
Computational Biology
Biology & Biotech
Required Skills
Python
Data Science
Machine Learning
Connection
Connection
Connection
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Requirements
  • Ph. D. degree in the field of computational structural biology or computational life sciences (e.g. bioinformatics, computer science, biophysics, computational biology, data science (AI/ML) or life sciences with strong expertise in AI/ML & computational protein design)
  • Post-doctoral level experience (2-4 years) on de novo protein design of immunoglobulin-like scaffolds
  • Strong track record in methods for predicting biomolecular complexes (e.g. docking) and computational protein engineering
  • Experience in the implementation and application of ML-based methods for generative protein design
  • Strong publication track record in the field of ML-driven immunoglobulin/protein design
  • Strong expertise in de novo protein design of immunoglobulin-like (Ig) scaffolds and functionalization studies
  • Deep understanding on the physical principles that govern protein folding and protein complex formation
  • Deep expertise in AI/ML-based approaches for protein de novo design including application, training & fine-tuning of generative protein language models, diffusion- and flow matching approaches
  • Knowledge of antibody/NANOBODY® structure, function & engineering
  • Proven experience on developing and applying computational methods for the prediction of antibody/NANOBODY® - antigen interactions (e.g. LightDock, HADDOCK)
  • Proficiency in Python and related libraries/software for de novo design (e.g. RFdiffusion, proteinMPNN, Rosetta, pyRosetta)
  • Ability to develop, benchmark and apply predictive algorithms for protein engineering
  • Experience in handling, curating, and managing large biological data sets and data bases
  • Expertise in developing and maintaining data pipelines and automated data workflows
  • Comfortable working in cloud and high-performance computational environments
  • Fluency in English
Responsibilities
  • Contribute to the evolution of our computational platform for Antibody/NANOBODY® de novo design
  • Drive the development, training, and integration of novel deep and machine learning-based models for protein design & optimization
  • Collaborate with interdisciplinary antibody & NANOBODY® screening and engineering teams to define strategies for experimental validation of computationally designed variants
  • Apply our computational workflows for protein design & optimization in portfolio projects to design novel antibody/NANOBODY® variants in the context of therapeutically relevant targets
  • Depending on your skill set, prior experience, and interests, there are opportunities to focus your contribution on specific aspects of the overall workflow (e.g. development of foundational AI-based models, application of computational methods in the context of portfolio projects,…)

Sanofi provides healthcare solutions through its pharmaceutical and biotechnology products, focusing on treatments and vaccines for various medical conditions. The company conducts extensive research and development to create new therapies and improve existing ones, particularly in areas like immunology, oncology, and rare diseases. Sanofi's products include prescription medicines, over-the-counter items, and vaccines, which are distributed to patients, healthcare professionals, and governments worldwide. What sets Sanofi apart from its competitors is its strong emphasis on scientific innovation and strategic partnerships, allowing it to maintain a diverse product pipeline and a global presence. The company's goal is to enhance health outcomes and improve the quality of life for individuals by delivering effective and safe healthcare solutions.

Company Size

10,001+

Company Stage

IPO

Headquarters

Paris, France

Founded

1973

Simplify Jobs

Simplify's Take

What believers are saying

  • Sanofi reported a 20% profit growth in Q1 2025, driven by Dupixent and new launches.
  • The FDA approved Dupixent for chronic spontaneous urticaria, expanding its treatment indications.
  • Sanofi's investment in Innate Pharma supports its strategic goals in oncology.

What critics are saying

  • Increased competition in immunology could impact Dupixent's market share.
  • Potential delays in EU approval for tolebrutinib may affect market entry.
  • The Dren Bio acquisition may not yield expected financial returns.

What makes Sanofi unique

  • Sanofi's Dupixent is the first targeted therapy for chronic spontaneous urticaria.
  • Tolebrutinib is a potential first-in-class therapy for non-relapsing secondary progressive multiple sclerosis.
  • Sanofi's acquisition of Dren Bio enhances its biopharmaceutical capabilities.

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Benefits

Health Insurance

Professional Development Budget

Parental Leave

Company News

Quantis
Apr 24th, 2025
Innate Pharma: €15M Investment by Sanofi

Innate Pharma announced a €15M investment by Sanofi, subscribing to 8,345,387 new shares at €1.7974 each. This capital increase supports their ongoing partnership, including the BCMA targeting ANKET® program. The investment will aid in extending Innate's cash runway for pipeline execution. The capital increase is expected to close on April 25, 2025, with shares trading on Euronext Paris the same day.

Yahoo Finance
Apr 24th, 2025
French Drugmaker Sanofi Clocks 20% Q1 Profit Growth, Forecasts Strong Rebound In Annual Profit

Sanofi SA (NASDAQ:SNY) reported Thursday a first-quarter 2025 business operating income of 2.9 billion euros ($3.06 billion), up 20.1% year over year and 18.7% in constant currency. The company reported first-quarter sales of 9.89 billion euros ($10.42 billion), beating the consensus of $9.77 billion. This was driven by launches, Dupixent, and favorable Beyfortus phasing. Sales increased 10.8% year over year and 9.7% on constant currency. U.S. sales were 4.66 billion and increased by 15.4%

PharmiWeb
Apr 24th, 2025
Dupixent Approved In The Us As The First New Targeted Therapy In Over A Decade For Chronic Spontaneous Urticaria

Dupixent approved in the US as the first new targeted therapy in over a decade for chronic spontaneous urticariaApproval based on phase 3 studies demonstrating Dupixent significantly reduced itch and hives compared to placeboIn the US, there are more than 300,000 adults and adolescents aged 12 years and older living with CSU who remain symptomatic despite antihistamine treatmentCSU is the seventh disease with underlying type 2 inflammation in which Dupixent is approvedParis and Tarrytown, NY, April 18, 2025. The US Food and Drug Administration (FDA) has approved Dupixent (dupilumab) for the treatment of adults and adolescents aged 12 years and older with chronic spontaneous urticaria (CSU) who remain symptomatic despite histamine-1 (H1) antihistamine treatment.Kenneth MendezPresident and Chief Executive Officer at the Asthma and Allergy Foundation of America“People with chronic spontaneous urticaria experience sudden, unpredictable hives and severe itch that cause a significant, and often overwhelming, burden on their everyday lives. The approval of this treatment offers patients more options and the chance to control their disease.”Alyssa Johnsen, M.D., Ph.D.Global Therapeutic Area Head, Immunology and Oncology Development at Sanofi“CSU patients with uncontrolled disease experience highly burdensome itch and hives that can significantly disrupt daily living. This FDA approval provides a new treatment option to help address the underlying drivers of these severe and recurring signs and symptoms. Dupixent has the potential to improve outcomes for CSU patients who previously had limited treatment options.”The US approval is based on data from two phase 3 clinical studies, Study A (n=136) and Study C (n=148), which included biologic-naïve patients aged 12 years and older who were symptomatic despite the use of antihistamines and assessed Dupixent as an add-on therapy to standard-of-care antihistamines, compared to antihistamines alone. Both studies met their primary and key secondary endpoints with Dupixent demonstrating reductions in itch severity and urticaria activity (a composite of itch and hives) compared to placebo at 24 weeks

PharmiWeb
Apr 9th, 2025
Tolebrutinib Phase 3 Data Published In Nejm Demonstrate Benefit On Disability Progression In Multiple Sclerosis

Results from the HERCULES phase 3 study showed delay in disability progression in people living with non-relapsing secondary progressive multiple sclerosisTolebrutinib has the potential to be the first therapy to modulate immunologic drivers of chronic inflammation behind the blood–brain barrier, a key driver of disability accumulation in MSTolebrutinib is being evaluated under priority review in the US with a target action date of 28 September 2025; regulatory submission dossier is under review in the EU with a decision expected in Q1 2026Paris, April 8, 2025. The New England Journal of Medicine (NEJM) published positive results from the HERCULES phase 3 study demonstrating that tolebrutinib delayed disability progression in people with non-relapsing secondary progressive multiple sclerosis (nrSPMS), where there are currently no treatment options approved. These findings further support the differentiated mechanism of oral, brain-penetrant tolebrutinib, targeting disability progression independent of relapse activity. These results were first presented at the ECTRIMS conference on September 20, 2024 in Copenhagen, Denmark and further analyses were also presented today during the Clinical Trials Plenary Session at the 2025 Annual Meeting for the American Academy of Neurology (AAN) in San Diego, California.Robert Fox, MDVice Chair of Research at Cleveland Clinic’s Neurological Institute, Cleveland, Ohio, US, and chair of the HERCULES global steering committee“Tolebrutinib represents a new class of therapy for the treatment of multiple sclerosis. In this large phase 3 study, tolebrutinib was found to slow the progression of disability in a subset of multiple sclerosis for which we have no approved therapies – non-relapsing secondary progressive disease. The results of this study signal a new chapter in multiple sclerosis because we finally found a potential way to treat non-relapsing secondary progressive forms.”Dr Fox is a paid advisor to Sanofi for the HERCULES study.Erik Wallström, MD, PhDGlobal Head of Neurology Development“By targeting disability progression mechanisms behind the blood-brain barrier, tolebrutinib has the potential to be a practice-changing therapeutic option for people living with multiple sclerosis

PharmiWeb
Mar 25th, 2025
Tolebrutinib Regulatory Submission Accepted For Priority Review In The Us For Patients With Multiple Sclerosis

If approved, tolebrutinib would be the first and only brain-penetrant BTK inhibitor to both treat non-relapsing secondary progressive multiple sclerosis (MS) and slow disability accumulation independent of relapse activityTolebrutinib has the potential to be the first therapy to target smoldering neuroinflammation, a key driver of disability accumulation in MSTolebrutinib was granted breakthrough therapy designation by the FDA based on positive results from the HERCULES phase 3 study in adults with non-relapsing secondary progressive MSParis, March 25, 2025. The US Food and Drug Administration (FDA) is evaluating under priority review the regulatory submission of tolebrutinib to treat non-relapsing secondary progressive multiple sclerosis (nrSPMS) and to slow disability accumulation independent of relapse activity in adult patients. The target action date for the FDA decision is September 28, 2025. A regulatory submission is also under review in the EU.The regulatory submissions in the US and the EU are supported by the results from the phase 3 studies HERCULES in nrSPMS and GEMINI 1 and 2 in relapsing MS (RMS). The findings from these studies, as well as additional clinical and preclinical studies, support the differentiated mechanism of tolebrutinib to target disability progression independent of relapse activity, and the scientific hypothesis that smoldering neuroinflammation represents a key inflammatory process in MS and is a critical driver of disability accumulation.Erik Wallström, MD, PhDGlobal Head of Neurology Development“The totality of data across our clinical program validates our scientific understanding of smoldering neuroinflammation as a distinct inflammatory process in MS. People living with non-relapsing secondary progressive multiple sclerosis or who experience disability independent of relapse activity suffer from disability that worsens over time due to persistent inflammation in the brain, known as smoldering neuroinflammation, which is the primary driver of disability

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