Full-Time

Senior Software Quality Engineer

Multiple Teams

Posted on 3/5/2025

Karius

Karius

201-500 employees

Non-invasive liquid biopsy for infectious pathogens

Compensation Overview

$139k - $208.5k/yr

San Carlos, CA, USA

Hybrid

Hybrid position requiring some in-office presence.

Category
QA & Testing (3)
, ,
Required Skills
Python
Postman
Git
AWS
JIRA
Playwright
Selenium
Requirements
  • Bachelor's degree (or M.S. degree) in Computer Science, Software Engineering, Electrical Engineering, Bioengineering, Bioinformatics, or related technical fields involving algorithms or coding (e.g., Physics or Mathematics)
  • 5+ years of experience in software quality engineering, with 3+ years in regulated environments (e.g. medical device software)
  • Experience with testing and validating bioinformatics pipelines or data-driven software (especially for clinical metagenomics applications) deployed on cloud-based platforms (e.g. AWS) is highly desirable
  • Experience writing clear, concise, and comprehensive test plans and test cases for software verification and validation
  • Experience with programming/scripting languages (primarily Python) and automated testing tools/frameworks (e.g. Postman, Selenium, Playwright, Pytest)
  • Experience with the software development lifecycle, requirements management, and traceability software (e.g. JAMA), and software project management tools (e.g. JIRA)
  • Experience with version control systems (e.g. Git, Github) and CI/CD processes
  • Familiarity with bioinformatics tools and genomic data formats is a strong plus
  • Strong understanding of federal regulations pertaining to IVD and/or LDT development (e.g. 21 CFR Part 11, 21 CFR Part 820, CAP/CLIA, NYS DOH) and related standards (e.g. IEC 62304, ISO 13485, ISO 14971)
  • Understanding of international medical device regulations (e.g. IVDR) is a plus
Responsibilities
  • Collaborate with software engineers, product managers, and technical stakeholders to understand system functionality, identify testable requirements, and resolve issues
  • Develop, execute, and maintain comprehensive test plans, test cases, and test scripts to validate bioinformatics software functionality, performance, and compliance
  • Perform manual and automated testing (e.g. functional, integration, regression, system testing) to ensure alignment with software requirements, risk assessments, and quality standards
  • Identify and implement improvements to testing processes, methodologies, and tools (e.g. automated test frameworks, quality metrics tracking) to enhance software quality and team productivity
  • Ensure all testing activities comply with applicable IVD and/or LDT regulations (e.g. 21 CFR Part 11, 21 CFR Part 820, CAP/CLIA, NYS DOH, IVDR) and standards (e.g. IEC 62304, ISO 13485, ISO 14971)
  • Maintain awareness of data privacy and security frameworks (e.g. HIPAA, SOC II, GDPR) to align with compliance needs
  • Develop and maintain traceability matrices linking test cases to software requirements, risk analyses, and design inputs/outputs
  • Contribute to software risk assessments and hazard analyses (e.g. FMEA) to identify and mitigate potential risks to patient safety
  • Support the preparation of documentation for design reviews, regulatory submissions, and audits
Desired Qualifications
  • Experience with testing and validating bioinformatics pipelines or data-driven software (especially for clinical metagenomics applications) deployed on cloud-based platforms (e.g. AWS) is highly desirable
  • Familiarity with bioinformatics tools and genomic data formats is a strong plus
  • Understanding of international medical device regulations (e.g. IVDR) is a plus

Karius provides rapid, non-invasive infectious-disease diagnostics using the Karius Test, a liquid biopsy that detects over 1,000 pathogens from a single blood sample. The test analyzes microbial cell-free DNA circulating in the bloodstream, using advanced genomics and artificial intelligence to identify pathogens. It operates on real-time genomic data and a constantly updated reference database, enabling clinicians to diagnose infections without multiple invasive tests. Unlike traditional methods, Karius combines a broad pathogen panel with machine-learning analysis to deliver faster results and reduce unnecessary procedures. The company's goal is to help healthcare providers diagnose infections quickly, improve patient outcomes, and reduce healthcare costs by offering a faster, less invasive diagnostic option.

Company Size

201-500

Company Stage

Series C

Total Funding

$345M

Headquarters

Redwood City, California

Founded

2014

Simplify Jobs

Simplify's Take

What believers are saying

  • FDA Breakthrough Designation expedites Karius Test approval for lung infections.
  • $100M Series C funding in May 2024 expands beyond 400 U.S. hospitals.
  • Test incorporated into 2023 Duke-ISCVID Criteria for infective endocarditis.

What critics are saying

  • Arcadia Biomed captures market share with faster plasma cfDNA test in 2025.
  • Illumina DRAGEN app enables in-house sequencing, eroding lab revenues by Q2 2025.
  • Day Zero Diagnostics displaces Karius in sepsis contracts through 2026.

What makes Karius unique

  • Karius Test detects over 1,000 pathogens via microbial cell-free DNA from single blood draw.
  • Proprietary AI analyzes genomic data in real-time for rapid infectious disease diagnosis.
  • CLIA-certified lab provides non-invasive liquid biopsy for immunocompromised patients.

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Benefits

Remote Work Options

Hybrid Work Options

Growth & Insights and Company News

Headcount

6 month growth

0%

1 year growth

0%

2 year growth

2%
Business Wire
May 16th, 2024
Karius Test® Receives Fda Breakthrough Device Designation To Aid In The Diagnosis Of Infectious Disease

REDWOOD CITY, Calif.--(BUSINESS WIRE)--Karius®, Inc., a leader in genomic diagnostics for infectious diseases, announced today that the Karius Test® has been granted designation as a Breakthrough Device from The Center for Devices and Radiological Health (CDRH) of the US Food and Drug Administration (FDA), for use in the diagnosis and management of immunocompromised patients with suspected lung infections including lower respiratory infection and pneumonia. “The Karius Test is commercially available nationwide as a laboratory developed test. We are seeking FDA marketing authorization of the Karius Test for lung infections in immunocompromised patients because improved diagnostic tests are urgently needed for these patients,” stated Brad Perkins, M.D., Chief Medical Officer of Karius. “As noted in the American Thoracic Society (ATS) Workshop Report for Immunocompromised Host Pneumonia: Definitions and Diagnostic Criteria,1 lung infections have high morbidity and mortality in immunocompromised patients, which is why advances in technologies like metagenomic sequencing used for the Karius Test are vital in improving the diagnosis and treatment of these patients.”. The Breakthrough Devices Program is a voluntary program for certain medical devices and device-led combination products that provide for more effective treatment or diagnosis of a life-threatening or irreversibly debilitating disease or condition. This program is designed to expedite the development and review of these innovative medical devices

Forbes
May 8th, 2024
Innovationrx: Deepmind Unveils Its New Protein-Folding Ai Model Alphafold 3

InnovationRx is your weekly digest of healthcare news. To get it in your inbox, subscribe here. A protein folding prediction in response to a small molecule generated by AlphaFold 3.Isomorphic LabsToday, Deepmind announced the launch of AlphaFold 3, the next generation of its AI software for structural biology, which has enabled thousands of researchers to predict the complicated chemical interactions involved with proteins. One major difference in the new iteration of the program: instead of just predicting protein folding, it predicts the interactions of other biological molecules as well including DNA, RNA and small molecules. The company published the accuracy of its predictions in the journal Nature.In addition to the new capabilities–which even includes the ability to make predictions based on epigenetic changes to DNA–the company has also launched AlphaFold Server, a web service that enables researchers to generate biochemical models without having to install the system itself from open source code, as was the case with previous iterations. Something else new is that AlphaFold now works with diffusion models – which are popularly known for being used by AI systems that generate images from text prompts – in place of some of its previous structural models.“The response to AlphaFold 2 was more than I could have ever imagined in terms of the kind of creativity and what the research community has done with it,” Deepmind research director John Jumper said at a press briefing

CityBiz
May 3rd, 2024
Karius Secures $100M in Series C

Karius, Inc., a genomic diagnostics company, has raised $100 million in a Series C funding round co-led by Khosla Ventures, 5AM Ventures, and Gilde Healthcare. The funds will be used to expand the reach of the Karius Test®, which detects over 1,000 pathogens from a single blood sample, beyond 400 U.S. hospitals. The company also added three new board members, including Alex Morgan from Khosla Ventures, Joep Muijrers from Gilde Healthcare, and Andrew Booth from 5AM Ventures.

RamaOnHealthcare
May 2nd, 2024
Karius Secures $100M to Expand Non-Invasive Pathogen Blood Test

Karius secures $100M to expand non-invasive pathogen blood Test.

Business Wire
May 2nd, 2024
Karius Secures $100M for Genomic Diagnostics Expansion

Karius, Inc. has raised $100M in Series C funding, co-led by Khosla Ventures, 5AM Ventures, and Gilde Healthcare, with participation from Seventure Partners and others. The funds will expand the reach of the Karius Test®, a genomic diagnostic test for infectious diseases, beyond 400 U.S. hospitals. The investment also supports research into microbial cell-free DNA technology. Additionally, Karius announced three new board members.

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