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Watershed Informatics

Bioinformatics platform for multi-omics analysis

High Performance Computing Engineer

Full-Time
No salary listed
Mid
Boston, MA, USA
In Person
Software EngineeringBackend Engineering

About the job

Requirements
  • Experience in all of the following areas: parallel computing, distributed computing, computer architecture, and software optimization
  • Programming experience in Python, C/C++, and Bash
  • Experience working with Unix/Linux, containerization, and cloud environments
  • Familiarity with networking, security, and the Linux operating system
  • Ability to analyze very complex problems and come up with novel solutions
Responsibilities
  • Integrate software libraries and cluster computing frameworks into high performance applications
  • Develop solutions for benchmarking, metric collection, and monitoring of resources
  • Collaborate with software engineers to optimizing software and maximize computational throughput

About the company

Watershed Informatics provides Watershed.bio, a subscription-based platform for analyzing multi-omics data used by researchers in academia, pharmaceutical companies, and biotech firms. The platform offers a web-based interface with data analysis workflows, visualization tools, and scalable infrastructure that helps users generate basic insights and publication-quality figures with minimal coding. It differentiates itself by acting as an active partner, offering infrastructure, data science expertise, and tailored services in addition to software. Its goal is to let clients focus on discovery by handling data processing, analysis pipelines, and expert support behind the scenes.

Company Size

1-10

Company Stage

Series A

Total Funding

$16.2M

Headquarters

Cambridge, Massachusetts

Founded

2020

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Simplify's Take

What believers are saying

  • The 2023 $14.5M Series A from Canvas, Bessemer, and Accomplice funded commercialization.
  • Watershed claimed ARR rose from $0 to $1M and team size doubled in 2023.
  • Named users include Harvard Medical School, Stanford, UC San Diego, Revitope, and SQZ Biotech.

What critics are saying

  • No current funding since 2023 suggests a long capital runway test by 2026.
  • Recent evidence is mostly marketing pages, not hard revenue disclosures or major enterprise expansions.
  • Crowded bioinformatics incumbents and internal platform teams can displace Omics Bench within 12 months.

What makes Watershed Informatics unique

  • Omics Bench unifies bulk, single-cell, spatial, ATAC-Seq, and proteomics workflows in one cloud lab.
  • Watershed sells to biologists and bioinformaticians, reducing coding dependence across R&D teams.
  • Customers cite end-to-end bio-IT delivery at lower cost than traditional bioinformatics consulting.

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Benefits

  • Health Insurance
  • Dental Insurance
  • Vision Insurance
  • Paid Vacation
  • Paid Holidays
  • Flexible Work Hours
  • Remote Work Options
  • Hybrid Work Options
  • 401(k) Retirement Plan
  • 401(k) Company Match
  • Wellness Program
  • Mental Health Support

Company News

GenomeWeb
Mar 30th, 2023
Watershed Informatics Closes $14.5M Series A Funding Round

The Cambridge, Massachusetts-based startup is developing AI-driven multiomic analysis software to support biomedical research and drug discovery.

EnvZone
Mar 30th, 2023
Watershed Informatics Secures $14.5M Series A to Help Scientists Unlock Multi-Omic Insights for Drug Discovery

-Watershed Informatics, developer of a multi-omics insight platform for biopharmaceutical discovery teams, today announced the closing of a $14.5M Series A financing led by Canvas Ventures, with participation from existing investors Bessemer Venture Partners and Accomplice Ventures.