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Matterworks

AI-powered MaaS for metabolomics data

Overview

Matterworks uses AI to analyze mass spectrometry data for metabolomics, offering a model-as-a-service platform to researchers in therapeutic research, biomanufacturing, crop science, and animal health. Its Large Spectral Model interprets complex molecular data, and Pyxis provides a turn-key solution that identifyies and quantifies metabolites from raw data in near real-time. This speeds up R&D by turning undecoded signals into actionable biological insights, helping researchers predict outcomes in areas like protein production and sustainable agriculture. The company differentiates itself by delivering end-to-end omics analysis as a service for a broad life sciences audience, focusing on accessibility, speed, and reducing the need for specialized analytics teams to accelerate life sciences R&D.

Significant Headcount Growth

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About Matterworks

Simplify's Rating
Why Matterworks is rated
B-
Rated B on Competitive Edge
Rated B on Growth Potential
Rated C on Differentiation

Industries

Data & AnalyticsAI & Machine LearningBiotechnologyHealthcare

Company Size

11-50

Company Stage

Seed

Total Funding

$13.8M

Headquarters

Somerville, MA

Founded

2019

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Simplify's take

What believers are saying

  • PyxisLabs launched July 2026, expanding revenue beyond software licensing into services.
  • October 2026 benchmarks showed Pyxis identified 38% of undocumented molecules, beating frontier models.
  • Paul Stone joined as CFO in February 2026, strengthening financing and partnerships execution.

What critics are saying

  • Competitors can replicate mass-spectrometry workflows faster than model moats mature by 2027.
  • PyxisLabs needs sustained wet-lab demand; weak utilization would burn Series A capital quickly.
  • If LSM-3 underperforms on real samples, customers will revert to incumbent analytical labs.

What makes Matterworks unique

  • PyxisLabs pairs LC-MS services with Pyxis software, collapsing analysis into one workflow.
  • LSM-3 trained on 10 billion spectra gives Matterworks proprietary biochemical interpretation depth.
  • Matterworks targets metabolomics and exposome-scale chemotyping, not generic biotech AI.

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Funding

Total Funding

$13.8M

Above

Industry Average

Funded Over

3 Rounds

Seed funding is usually the first official round after pre-seed, when a startup has a prototype or concept. It’s typically used to develop the product, test the market, and start building the team. Investors here are often angel investors or early-stage venture capitalists.
Seed Funding Comparison
Above Average

Industry standards

$3.3M
$2M
$2.3M
$3M
$7.5M

Benefits

  • Health Insurance
  • Dental Insurance
  • Vision Insurance
  • Long-term Disability Insurance
  • Short-term Disability Insurance
  • Life Insurance
  • 401(k) Retirement Plan
  • Stock Options
  • Flexible Work Hours
  • Unlimited Paid Time Off
  • Remote Work Options
  • Paid Vacation

Growth & Insights and Company News

6 month growth

2%

1 year growth

4%

2 year growth

2%
PR Newswire
Jul 28th, 2026
Matterworks launches PyxisLabs to scale biochemical omics with AI-powered analysis

Matterworks has launched PyxisLabs, an AI-powered laboratory designed to commercialise biochemical omics at scale. The facility is powered by Pyxis, Matterworks' AI co-scientist that provides PhD-level biochemical interpretation for life sciences applications. Pyxis is built on Matterworks' LSM-3 foundation models, trained on over 10 billion spectra across millions of molecules. The system determines structures and concentrations of biomolecules at genome and exposome scale. PyxisLabs offers two service models: organisations can licence Pyxis to interpret data from their own LC-MS instruments, or send samples directly for genome-scale chemotyping. The lab currently provides small-molecule and lipid analysis, with peptides and proteins planned for future release. Early adopters span biopharma, health science, diagnostics, synthetic biology, and contract research industries. Matterworks is based in Somerville, Massachusetts.

PR Newswire
Feb 17th, 2026
Matterworks appoints Paul Stone as CFO to expand life sciences AI platform partnerships

Matterworks, a frontier AI company providing predictive biology tools for life sciences, has appointed Paul Stone as Chief Financial Officer and Head of Corporate Development. Stone brings 28 years of experience in venture capital and operating roles, most recently as partner at 5AM Ventures and previously as CFO at IDEAYA Biosciences. The Somerville, Massachusetts-based company's platform uses Large Spectral Models for machine interpretation of biochemical data to predict complex biological outcomes. Matterworks has demonstrated applications across target identification, compound optimisation, biomarker discovery, patient stratification, cell-line development and bioprocess development. CEO Jack Geremia said the appointment supports expansion of commercial and partnership development activities as the company engages with pharmaceutical and biotech firms to enhance efficiency in research, development and manufacturing.

World News Network
Jun 3rd, 2025
Matterworks Secures Series A Funding

Matterworks, Inc., based in Somerville, Mass., announced securing Series A funding to advance machine intelligence for predictive biology. The financing round was led by Lewis & Clark Partners and OMX Ventures, with participation from Pillar VC, Germin8 Ventures, and Intermountain Ventures.

PR Newswire
Jun 3rd, 2025
MATTERWORKS INC. SECURES SERIES A FUNDING TO ADVANCE MACHINE INTELLIGENCE FOR PREDICTIVE BIOLOGY

/PRNewswire/ -- Matterworks, Inc., the category-defining pioneer unlocking unstructured molecular data for predictive biology, today announces new Series A...

PR Newswire
May 2nd, 2024
Matterworks Announces Updates To Leadership Team

SOMERVILLE, Mass., May 2, 2024 /PRNewswire/ -- Matterworks, Inc., whose foundational AI platform and predictive biology applications accelerate life sciences discovery and development, today announces additions to its leadership team.Matterworks is pleased to announce the appointments of Jennifer M. Campbell, Ph.D. to the position of Chief Scientific Officer and Niall O'Connor to the position of Chief Technology Officer.Dr. Campbell is a distinguished leader in mass spectrometry and molecular analysis, bringing 25 years of expertise to the role. She joined Matterworks from Novartis Institutes of Biomedical Research in 2021 to lead R&D from initial product conceptualization through development and early customer testing. In late 2023 Dr

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