Nautilus Biotechnology develops a proteomics platform that maps the human proteome to speed up drug discovery. The platform analyzes thousands of proteins across biological samples to reveal which drug targets are most likely to succeed in clinical trials, helping researchers prioritize targets with higher potential. The company sells the platform and related services to pharmaceutical companies, research institutions, and biotech firms, operating on a B2B model. Unlike tools that focus only on genes or small-molecule data, Nautilus provides direct protein-level insights at large scale, combining deep proteome coverage with analytics to reduce time and costs in target discovery. Its goal is to unlock the proteome to enable breakthroughs in biology and medicine and to improve global health outcomes by accelerating and improving drug development.
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Industries
Company Size
51-200
Company Stage
IPO
Headquarters
Seattle, WA
Founded
2016
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Total Funding
$459.2M
Above
Industry Average
Funded Over
5 Rounds
Nautilus Biotechnology, a Seattle-based developer of a single-molecule proteome analysis platform, reported a third-quarter net loss of $15.6 million, up from $13.6 million a year earlier. Revenue was $0.2 million, mostly from a Michael J. Fox Foundation grant and early access program services. Operating expenses rose 10% to $16.9 million on higher laboratory, professional services, and salary costs. Cash, cash equivalents, and investments stood at $114.3 million on September 30, 2026. After quarter end, the company joined SEEDS, a four-year research consortium funded by the Advanced Research Projects Agency for Health. Nautilus expects to receive up to $6 million to use its Voyager platform to measure proteoforms tied to Alzheimer's disease and cancer. Chief executive officer Sujal Patel said the company still plans instrument availability in mid-2027.
Nautilus Biotechnology expects to receive up to $6 million to join SEEDS, a four-year research consortium awarded up to $51.7 million by the Advanced Research Projects Agency for Health (ARPA-H). The Buck Institute for Research on Aging and Georgetown University co-lead the group. SEEDS aims to predict how disease-causing proteins misfold before irreversible damage occurs. It will use those predictions to develop ways to detect and treat neurodegenerative diseases and cancer. Nautilus will use its Voyager Platform to measure proteoforms, the distinct versions of proteins, in model systems, disease tissues, and biofluids. Work starts with Alzheimer's disease and Ewing sarcoma. The resulting data is expected to train AI models that predict how proteoforms push a protein toward aggregation.
Nautilus Biotechnology has published research in Nature Methods demonstrating its ability to quantify tau protein variants at unprecedented scale. The study used the company's Iterative Mapping technology to identify 130 tau proteoform groups, including those present at just 0.1% of samples. The research revealed that disease-associated modifications accumulate on tau proteins in ordered, non-random sequences. This insight could enable development of new diagnostics and therapeutics for Alzheimer's disease and related conditions. Nautilus is now applying the same approach to α-synuclein in Parkinson's disease and AKT1, its first oncology proteoform assay. The AKT1 assay is expected to enter early access in late 2026. The Seattle-based company targets roughly 20 proteoform assays by mid-2028. The Nautilus Tau Proteoforms Assay is currently available through its Early Access Programme.
Nautilus Biotechnology, a company developing a single-molecule proteome analysis platform, reported a net loss of $14.7 million for the first quarter of 2026, compared to a $16.6 million loss in the corresponding period last year. Operating expenses decreased 14% year-over-year to $16.1 million, driven by lower salary, benefits, stock-based compensation and facilities costs. The company held $143.4 million in cash, cash equivalents and investments as of 31 March 2026. During the quarter, Nautilus initiated its Iterative Mapping Early Access Programme with Baylor College of Medicine and appointed Amber Faust, a proteomics veteran from Olink Proteomics and SomaLogic, as Vice President of Global Sales. The company is developing its Voyager Platform ahead of commercial launch.
Nautilus Biotechnology has announced Baylor College of Medicine as the first customer of its Iterative Mapping Early Access Program for the Voyager Platform. Through an NIH U01-funded study, Baylor will use Nautilus' single-molecule proteomics technology to develop a computational multi-omics toolkit for cancer research. The project, led by Professors Bing Zhang and Yongchao Dou, aims to identify aberrant protein isoforms that contribute to tumour growth, metastasis, immune evasion and therapeutic resistance. Researchers will combine computational approaches with full-length, isoform-resolved proteomic measurements from the Nautilus Voyager Platform to enable direct comparison of transcriptional and proteomic changes at unprecedented resolution. The collaboration pairs Baylor's multi-omics expertise with Nautilus' validated tau proteoforms assay to advance high-resolution cancer isoform analysis.
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Industries
Company Size
51-200
Company Stage
IPO
Headquarters
Seattle, WA
Founded
2016
Find jobs on Simplify and start your career today
Don't see your dream role? Check out thousands of other roles on Simplify.Browse all jobs