Full-Time

Member of Technical Staff

Agent Engineer

Phylo

Phylo

11-50 employees

Unified AI platform coordinating biology workflows

No salary listed

San Bruno, CA, USA

In Person

Category
Software Engineering (1)
Required Skills
LLM
Machine Learning

Get referred to Phylo

See people who can refer or advise you

Requirements
  • Strong software engineering experience building production backend systems, infrastructure, or distributed systems.
  • Research or production experience in machine learning, or another quantitative discipline.
  • Familiarity with LLM APIs, tool calling, agent runtimes, or workflow orchestration.
  • Strong quantitative judgment and the ability to determine whether an apparent improvement is real, reproducible, and meaningful.
  • Ability to move between research questions, data analysis, system design, and production implementation.
  • Experience or strong interest in AI for science, scientific agents, computational research, or automated scientific discovery.
  • Experience working in AI-native teams that use coding agents or automation extensively.
  • High ownership, clear communication, and strong engineering judgment.
  • We care more about demonstrated ability than a particular credential. Relevant backgrounds may include ML or LLM engineering, academic research paired with substantial software development, scientific computing, or production systems engineering with demonstrated quantitative experience.
Responsibilities
  • Advance the agent harness by bringing the latest research and open-source developments into production and experimenting with new approaches to multi-agent coordination, model routing, memory, planning, and tool use.
  • Build rigorous evaluations that measure agent quality, reliability, latency, and cost on representative scientific tasks.
  • Monitor agent quality in production, troubleshoot failures quickly in high-ambiguity situations, and translate findings into engineering improvements.
  • Collaborate on reliable infrastructure for long-running sessions, safe sandboxed execution, background work, and subagents.
  • Partner with scientists and engineers to evaluate and productionize new agent capabilities.
Desired Qualifications
  • Experience with LLM evaluations, human evaluation, model judges, replay testing, benchmark design, or experiment tracking.
  • Experience applying classical machine learning methods alongside LLMs in production systems.
  • Experience with task queues, event streams, Kubernetes, code sandboxes, or durable workflow systems.
  • An advanced degree or equivalent experience in machine learning, computational biology, physics, applied mathematics, statistics, or a related field.

Phylo builds an Integrated Biology Environment (IBE) called Biomni Lab, a central AI-powered workspace designed to unify the fragmented software tools, databases, and analysis packages scientists use. It functions as an orchestration layer with a chat-like interface that lets researchers plan experiments, analyze data, search literature, and visualize results (including 3D molecular models) by issuing natural-language commands. It connects to hundreds of specialized tools and databases and uses AI agents to automatically format data and move it between systems, reducing manual work. The core product is offered in a freemium model, with Biomni Lab available as a free cloud service (with usage limits) and a paid enterprise version that provides dedicated infrastructure, custom agents, and stronger security.

Company Size

11-50

Company Stage

Seed

Total Funding

$13.5M

Headquarters

South San Francisco, California

Founded

2025

Get referred to Phylo

See people who can refer or advise you

Simplify Jobs

Simplify's Take

What believers are saying

  • Over 8,400 users across 4,300 organizations adopted Biomni Lab within 72 days.
  • Ginkgo Bioworks reduced cell-painting workflows from weeks to hours with publication-quality results.
  • Proprietary access to Consensus and COSMIC enables seamless literature and cancer genomics integration.

What critics are saying

  • Ginkgo Bioworks adopts Biomni daily without paying, eroding freemium conversion revenue in 6–12 months.
  • Real bioinformatics pipelines fail due to dependency conflicts, causing publication rejections in 3–6 months.
  • Anthropic and a16z co-develop a competing platform, cutting off Phylo from key AI models in 12–18 months.

What makes Phylo unique

  • Phylo unifies 300+ biomedical tools via agentic AI for end-to-end workflow automation.
  • Biomni Lab compresses weeks-long research cycles into hours using natural language commands.
  • Multi-agent architecture learns from real research traces, creating compounding data advantages.

Help us improve and share your feedback! Did you find this helpful?

Benefits

Health Insurance

Dental Insurance

Vision Insurance

401(k) Retirement Plan

Unlimited Paid Time Off

Hybrid Work Options

Wellness Program

Mental Health Support

Growth & Insights

Headcount

6 month growth

-16%

1 year growth

-16%

2 year growth

-16%