C

Certara

Biosimulation and model-informed drug development platform

Engineering Manager

Full-TimeUpdated on 10/15/2026Deadline 10/9/27
No salary listed
Mid
Budapest, Hungary
HybridBudapest-based hybrid role.
Engineering ManagementEngineering Leadership

About the job

Requirements
  • Experience leading a team of 5 or more software engineers, including regular one-to-ones, clear performance feedback, and documented development plans.
  • Demonstrated ability to build consensus across departments under competing priorities.
  • Progressive engineering leadership experience with credible technical judgment, including code review, escalation triage, and architectural tradeoffs, and comfort operating in quality-conscious release environments.
Responsibilities
  • Develop and lead 7–10 software engineers across Europe, with emphasis on one-to-ones, performance feedback, documented growth plans, and input on future hiring needs.
  • Own release coordination, tier-one Phoenix Cloud implementation escalations, and cross-functional prioritization with Product Owners and Test Engineers when projects compete for the same resources.
  • Foster technical decision-making on the team and make final calls when needed.
  • Participate in ISO certification activities with quality and compliance partners.
  • Drive portfolio improvements such as AWS cost optimization, internal training, engineering dashboards, and consistency across reporting products.
  • Quickly develop capability in hiring and developing engineers on distributed teams across Europe.
  • Quickly develop capability in participating in ISO certification activities alongside quality and compliance partners.
  • Quickly develop capability in coordinating release and implementation work across product, QA, and customer-facing delivery.
Desired Qualifications
  • Regulated experience is a plus.
  • Experience shipping regulated software, working near clinical or scientific users, or a background in finance, life sciences quality, or regulatory software may help the candidate ramp faster.
  • Experience with analytics, reporting, or data-visualization products on a multi-tenant cloud platform, or exposure to AI-assisted product features, is a plus but not required.

About the company

Certara provides biosimulation and model-informed drug development tools and services to pharma, CROs, and researchers. Its products include Phoenix WinNonlin for PK/PD and NCA, the Simcyp Simulator for PBPK modeling, D360 for scientific informatics, and Certara.AI for AI-assisted medical writing and regulatory tasks. The platform suite builds and runs mathematical models to predict drug behavior, streamline data, and support regulatory submissions across discovery to market access. It differentiates itself with an end-to-end ecosystem and broad regulatory experience, serving thousands of organizations worldwide to speed up and improve drug development decisions.

Company Size

1,001-5,000

Company Stage

IPO

Headquarters

Radnor Township, Pennsylvania

Founded

2008

Get referred to Certara

See people who can refer or advise you

Simplify Jobs

Simplify's Take

What believers are saying

  • Marvin Cloud launched worldwide on September 29, 2026, opening individual and academic subscriptions.
  • Q2 2026 software revenue grew 4%, and bookings rose 9% to $50.7 million.
  • Management targets $13 million annualized savings and authorized another $50 million buyback.

What critics are saying

  • Q2 2026 revenue grew 1%, while services fell 3% and margins compressed.
  • The May 2026 divestiture cut $50 million revenue and triggered 5% layoffs.
  • If software growth stalls, Veristat-era services weakness turns Certara into a low-growth niche vendor.

What makes Certara unique

  • Certara combines Simcyp, Phoenix, D360, and Chemaxon into one drug-development stack.
  • Its models sit inside FDA and global regulatory workflows, embedding switching costs.
  • The May 2026 divestiture sharpened Certara around software-led MIDD and biosimulation.

Help us improve and share your feedback! Did you find this helpful?

Benefits

  • Professional Development Budget

Growth & Insights and Company News

Headcount

6 month growth

7%

1 year growth

7%

2 year growth

17%
Certara
Oct 13th, 2026
2nd Model-Informed Drug Development Summit.

2nd Model-Informed Drug Development Summit. Conference: 2nd Model-Informed Drug Development Summit. Date: November 18 - 19, 2026 Location: Wyndham Boston Beacon Hil, Boston, MA Certara is an Expertise Partner of the summit. Certara is proud to support the 2nd Model-Informed Drug Development Summit, where clinical pharmacology, pharmacometrics, QSP, and regulatory leaders gather around the questions now shaping MIDD in practice: turning model-informed evidence into decisions regulators accept, preparing for ICH M15, and scaling quantitative methods beyond a single program. As the FDA MIDD Pilot Program, Project Optimus, and ICH M15 raise the bar on what sponsors are expected to bring, Certara's modeling, simulation, and regulatory expertise offers a practical route through the dosing, evidence, and submission questions teams are working through right now. Meet Certara at the summit. VP, Head of QSP Software Dr. Apgar is the VP, Head of QSP Software at Certara, and co-founder of Applied BioMath (acquired by Certara in Dec 2023). Prior to this, Josh was a Principal Scientist in the Systems Biology Group of the Department of Immunology and Inflammation at Boehringer Ingelheim Pharmaceuticals. His work leveraged physics-based models to: translate in vitro and in vivo data, assess target feasibility, understand drug mechanism of action, and predict human doses. The ultimate goal of this work was to reduce late stage attrition in drug development through a deep and quantitative interrogation of drug pharmacology and disease pathophysiology. Josh received his PhD from MIT in Biological Engineering where he worked on experiment design for Systems Biology, focusing on the identification of tractable experiments that could allow for the estimation of unknown parameters and reveal complex mechanisms in signal transduction networks. Before that Josh worked at Avaki to develop a highly scalable software platform to support High Performance Computing, and Enterprise Information Integration in the Life Sciences, and Engineering. Katie Williams, PhD Global Portfolio Lead, Modeling & Simulation Where to hear Certara insights and expertise. Speaking session: Wednesday, Nov 18 2:30 PM - 3:00 PM What Certara is seeing in MIDD: regulatory momentum, ICH M15, and what it means for your next submission. Scientific poster: Details coming soon - check back here for the Certara research being presented during the summit's dedicated poster session.

Certara
Oct 5th, 2026
2nd TCE for Autoimmune Disease Summit.

2nd TCE for Autoimmune Disease Summit. Conference: 2nd TCE for Autoimmune Disease Summit. Date: October 27 - 29, 2026 Location: The Colonnade Hotel, Boston, MA Certara is proud to support the 2nd T-Cell Engager for Autoimmune Disease Summit, where discovery, translational, preclinical, and clinical leaders are tackling the field's biggest challenges: reducing CRS toxicities, improving tissue-selective immune depletion, and expanding T-cell engager (TCE) targets beyond B-cells. As autoimmune TCEs move from oncology-inspired concepts into one of the industry's most closely watched therapeutic modalities, Certara's quantitative systems pharmacology (QSP) expertise offers a mechanistic path through the dosing and translational questions shaping this fast-moving field. Meet Certara at the summit. VP, Head of QSP Software Before co-founding Applied BioMath, Josh was a Principal Scientist in the Systems Biology Group of the Department of Immunology and Inflammation at Boehringer Ingelheim Pharmaceuticals. His work leveraged physics-based models to: translate in vitro and in vivo data, assess target feasibility, understand drug mechanism of action, and predict human doses. The ultimate goal of this work was to reduce late stage attrition in drug development through a deep and quantitative interrogation of drug pharmacology and disease pathophysiology. Josh received his PhD from MIT in Biological Engineering where he worked on experiment design for Systems Biology, focusing on the identification of tractable experiments that could allow for the estimation of unknown parameters and reveal complex mechanisms in signal transduction networks. Before that Josh worked at Avaki to develop a highly scalable software platform to support High Performance Computing, and Enterprise Information Integration in the Life Sciences, and Engineering. Scientific poster. Details coming soon - check back here for Certara's latest T-cell engager research being presented at the summit.

Certara
Oct 1st, 2026
How do you know you have the right dose? Using exposure-response evidence to justify and defend dose decisions.

How do you know you have the right dose? Using exposure-response evidence to justify and defend dose decisions. Date: Thursday, November 5, 2026 Time: 10:00 - 11:00am ET Summary. Selecting the right dose is one of the most consequential decisions in drug development. But how do you know your selected dose is truly the right one and that the rationale will stand up to scientific and regulatory scrutiny? Exposure-response (ER) analysis can provide critical evidence for dose selection, optimization, benefit-risk assessment, and regulatory decision-making. But an apparent relationship does not always tell the full story. Exposure metric selection, treatment interruptions, dose modifications, and time-dependent confounding can influence results and potentially lead to the wrong conclusions. Join Certara experts to explore how rigorous ER analysis and modeling and simulation can help teams evaluate dose options, address uncertainty, integrate efficacy and safety, and build scientifically defensible dose recommendations. The discussion will also examine how ER analysis fits within Model-Informed Drug Development (MIDD) and the evolving expectations for dose optimization under FDA Project Optimus and ICH M15. During this webinar, you will learn how to: * Select exposure metrics and ER approaches based on the specific development question * Recognize when treatment interruptions, dose modifications, and time-dependent confounding may distort ER conclusions * Use modeling and simulation to evaluate dose options, assumptions, and uncertainty * Integrate efficacy and safety ER evidence to strengthen benefit-risk assessment * Translate ER findings into scientifically defensible dose recommendations * Use quantitative evidence to support regulatory interactions and labeling decisions * Position ER analysis within a broader MIDD evidence strategy This webinar is designed for professionals in clinical pharmacology, pharmacometrics, modeling and simulation, MIDD, clinical development, regulatory and translational sciences, and development strategy involved in dose selection, optimization, and regulatory decision-making. Speakers: Vice President, Europe/APAC Regional Lead of Quantitative Science Dr. Cheung has more than 20 years of experience in modeling and simulation, as well as clinical pharmacology, with expertise in PBPK/PD mechanistic modelling, special populations (e.g., pediatrics, maternal, and geriatrics), extrapolation, model-based meta-analysis, vaccines, infections, HIV, complex biologics, and different therapeutic areas across early, late-phase and post marketing drug development. She is an honorary professor at the School of Engineering at the University of Warwick, UK. She is leading the EU funding project, ERAMET (grant agreement number 101137141), in work package 5, championing the enhancement and utilization of extrapolation in pediatric populations and for rare diseases. Before joining Certara, Amy was a Senior Pharmacometrician and Scientific and Project Leader at the AstraZeneca Pediatric Working Group, which included 22+ cross-functional pediatric experts. During this time, she also served as the company representative on the IMI DDMoRe initiative and co-led work packages (e.g., PMX-workflow, cardiovascular training) and IQ consortium CPLG Pediatric Working Group. Dr Cheung has been a member of the EFPIA MID3 workgroup since the 2011 EMA M&S workshop, which resulted in several white papers. Currently, she is contributing her expertise to various professional societies, such as the IQ Consortium, EFGCP, ASCPT, and EU Horizon-funded projects. She has published over 50 papers on MIDD methodology/applications, reviews, and white papers in peer-reviewed journals. Senior Director Dr. Eline van Maanen brings over 16 years of experience in pharmacometric consulting. She joined Certara in 2018. Before that, she was a PKPD consultant at LAP&P Consultants. Eline has dedicated her entire career to the field of pharmacometrics. Her expertise includes mechanistic PKPD modeling across a range of therapeutic areas, such as neurology, oncology and infectious diseases. Eline received a PhD in Pharmacology from Leiden University in 2017, where she studied systems pharmacology of the amyloid cascade under the supervision of Prof. Meindert Danhof. Eline has a background in engineering, holding a MSc degree in Life Science and Technology from Delft University of Technology. Outside of work, Eline enjoys pilot-gig rowing. Senior Director Anna Largajolli, PhD is a Senior Director at Certara Drug Development Solutions with over 15 years of experience in pharmacometric modelling and clinical pharmacology. She holds a B.Sc. and M.Sc. in Biomedical Engineering (cum laude) and a PhD in Pharmacometric Modelling, all from the University of Padova (Italy). Her career spans academia and industry, including a visiting PhD studentship at the University of Cape Town, a postdoctoral fellowship at Uppsala University (Sweden), and a postdoctoral fellowship at GSK, before joining Certara in 2016 where she has progressively advanced to her current senior leadership role. Anna has deep expertise across a broad range of modelling and simulation techniques - including population PK, PKPD, model-based meta-analysis (MBMA), and machine learning-based covariate selection - applied across multiple therapeutic areas. She leads project teams, mentors junior associates, and contributes actively to scientific innovation through an extensive publication and conference presentation record.

Certara
Oct 1st, 2026
Peptide Design & Discovery: D360 enhancements make it faster to move from a sequence idea to a prioritized design candidate.

Peptide Design & Discovery: D360 enhancements make it faster to move from a sequence idea to a prioritized design candidate. The latest release of Certara's scientific informatics platform, D360 26.5, continues to help discovery teams access, analyze, and visualize molecule and bioactivity data across therapeutic modalities. Building on the peptide sequence design capabilities introduced earlier, the 26.5 release gives scientists an even stronger toolkit for generating and evaluating peptide ideas within a sequence alignment. This includes: * A new find and replace capability lets scientists swap monomers or sequence motifs across sandbox sequences in a single action * A new monomer enumeration tool automates classic design strategies such as alanine scanning * Newly added calculated properties, including monomer count, natural monomer count, specific monomer counts, and BILN-based sequence differencing - update automatically as sequences are edited, giving scientists immediate insight into each new design * Improved error detection for branched peptides This update also improves usability with expanded dashboard search, a redesigned Web All Entity details report, direct Excel import, and new equation functions for in-app analysis. On the administration side, D360 26.5 adds configurable Preferred Results for assay queries, a new Client Plugins panel for independently updating sketchers and renderers, and enhancements to authentication and automated testing tools. Want to bring faster peptide design and streamlined workflows to your team?

Certara
Sep 29th, 2026
Get the presentation: Building investor-ready biotech strategies.

Get the presentation: Building investor-ready biotech strategies. See the full presentation from Certara's Biotech Forum, a strategic workshop built to help biotech executives, founders, and R&D leaders develop investor-ready strategies ahead of RESI and JPM Healthcare 2027. What's in the presentation. This deck covers the full day of content from Certara's Biotech Forum, held in partnership with Life Science Nation (LSN), organizers of RESI, including: * Building a clear value proposition: what investors actually look for in a pitch: a well-defined medical need, genuine differentiation, and the regulatory and commercial foresight to back it up * Designing a development plan that supports financing and regulatory success: how to build a realistic path from IND to first-in-human that satisfies both regulators and investors * Selecting the right clinical candidate: what "investor-ready" evidence looks like, from translational relevance to study design and manufacturability * Corporate factors that shape investor decisions: LSN's perspective on the factors investors weigh beyond the science * Future trends in regulatory science: how recent regulatory shifts are changing the way companies need to plan earlier in development * Preparing for RESI and JPM week: how to prepare before these events, run productive meetings during them, and convert conversations into real momentum after it ends * [Discussion only] Cross-functional perspectives on early development: perspectives from biotech leaders, investors, pharma, and Certara experts on how early strategic decisions shape risk, speed, and fundability. This presentation is built for: * Biotech CEOs, founders, and executive teams preparing for RESI and JPM * R&D leaders refining development strategy * Venture and investment professionals evaluating early-stage programs * Business development teams preparing for partnering meetings Featuring insights from: Sougato Das (Life Science Nation), Tony Arulanandam, DVM, PhD (SynaptImmune Therapeutics), Wojciech Dworakowski (Pioneering Medicines), Katya Tsaioun, PhD (Akttyva Therapeutics), Dustin Armstrong, PhD (Parasail LLC), and Certara's Fran Brown, Maximilian Vargas, Kevin Hershberger, Geoff Fatzinger, Tong Zhu, Diana Marcantonio, John Pennet (Mid Atlantic Bio Angels) and Koji Yasuda (Fast Track Initiative) Ready to see the full presentation? Get instant access to the complete deck, covering value proposition development, regulatory-ready planning, clinical candidate selection, and RESI/JPM meeting prep. Download the presentation Access this resource